dMSCt0w_4r3RfieJe5afGb 1 2009-06-18T05:52:44-07:00 (originally reported by Thomas) The Words table is supposed to contain every word only one time. This does not always work correctly. To reproduce: Use the word splitter on a single table and field, and close the word splitter. Reopen the word splitter, and select a different table or field to split in the same database. Already existing words in the Words table will not be re-used, but doubles will be created. 0 409254 1 false 95307 dMSCt0w_4r3RfieJe5afGb 1 2 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Word splitter does not properly re-use existing words

2010-08-24T03:45:22-07:00 4.0 4.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGb 6 2010-02-26T08:45:58-08:00 Currently, SAINT is locked to using MS Access for it's data. That needs to change. 0 1022415 42 false 95307 dMSCt0w_4r3RfieJe5afGb 42 2 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 4 Test 0

Make data backends interchangable

2011-05-26T02:20:07-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 7 2010-07-16T02:20:22-07:00 Dear Andre Sorry - missed this mail first. I'll try to send the data, but the file is big and I am in a place without good connections. May be it is easier to use the data of Edwin. Round jaccard = choice which similarity is used from the raw jaccard query. Ok, I understand the bug: in the old version all three are equal as they all were treated as unvalued. In the new version this still the case for the roundjaccard and the unvalued. But not equal to the old unvalued one. May be the only problem in the new version is that you now do not correctly calclate the unvalued. Best Peter Peter van den Besselaar ---------------------------- Professor Organization Sciences, VU University Amsterdam www.vandenbesselaar.net ------------------------------------------------------- Rathenau Instituut / Royal Netherlands Academy of Arts and Sciences professor of organization and dynamics of science ------------------------------------------------------- (with my BlackBerry) -------------------------------------------------------------------------------- From: André Somers <a.somers@rathenau.nl> Date: Fri, 16 Jul 2010 10:13:33 +0200 To: Peter van den Besselaar<p.vandenbesselaar@rathenau.nl>; James Dawson<j.dawson@rathenau.nl>; Thomas Gurney<t.gurney@rathenau.nl>; 'edwin.horlings@gmail.com'<edwin.horlings@gmail.com> Cc: Edwin Horlings<e.horlings@rathenau.nl> Subject: RE: New version of NetworkTools Peter, Thanks for your thorough test! That is very helpful. Could you please send me the dataset you worked on. I don't know what "rounded jaccard" is exactly. As noted in the email, the new version fixes a bug where the value of the link was (sometimes?) not taken into account. That is: the network was treated as an unvalued network. That is obviously incorrect. It is strange however that the 'unvalued' version is not equal in both. I think this needs a bit more analysis. André -------------------------------------------------------------------------------- From: Peter van den Besselaar Sent: 16 July 2010 09:57 To: André Somers; James Dawson; Thomas Gurney; 'edwin.horlings@gmail.com' Cc: Edwin Horlings Subject: RE: New version of NetworkTools Dear all, I tried the new version and it comes up with completely different community structures than the old did. I did therefore some testing. 1. Whereas the old version created 18 communities on the highest level, the new gives 50. 2. If the new one is correct, the analyses done with the old are wrong. James, what about chemistry and robotics? Edwin, was the esocialscience analysis done with the old version? 3. the old version gives the same outcomes using the jaccard, roundjaccard and unvalued 4. the new version gives the same for roundjaccard and unvalued, but a different one for valued. Both seem therefore problematic!! please comments! best regards peter *Previous version (round jaccard)* output stored in table [Articles communities 4] number of nodes: 14537 number of connections: 555667 number of community levels: 4 community count overview: level 1 : 14537 level 2 : 132 level 3 : 24 level 4 : 18 *Previous version (jaccard)* output stored in table [Articles communities 5] number of nodes: 14537 number of connections: 555667 number of community levels: 4 community count overview: level 1 : 14537 level 2 : 132 level 3 : 24 level 4 : 18 *Pevious version (unvalued)* output stored in table [Articles communities 9] number of nodes: 14537 number of connections: 555667 number of community levels: 4 community count overview: level 1 : 14537 level 2 : 132 level 3 : 24 level 4 : 18 *new version (jaccard)* output stored in n [Articles communities 7] number of nodes: 14537 number of connections: 555667 mber of community levels: 5 community count overview: level 1 : 14537 level 2 : 1340 level 3 : 117 level 4 : 52 level 5 : 50 * new version (round jaccard)* output stored in table [Articles communities 8] number of nodes: 14537 number of connections: 555667 number of community levels: 5 community count overview: level 1 : 14537 level 2 : 1360 level 3 : 130 level 4 : 71 level 5 : 69 *new version (unvalued)* output stored in table [Articles communities 10] number of nodes: 14537 number of connections: 555667 number of community levels: 5 community count overview: level 1 : 14537 level 2 : 1360 level 3 : 130 level 4 : 71 level 5 : 69 0 1757279 50 false 95307 dNGZWeG0yr3OBZeJe5afGb,dCxEO0xlar3Q8teJe5aVNr,cP7gCMSMCr3OjxeJe5aVNr,djiOvaMOWr36_feJe5cbLr,dMSCt0w_4r3RfieJe5afGb 50 2 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 4 Test 0

Community detection output seems wrong

2010-08-24T09:23:44-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Bug Bug dMSCt0w_4r3RfieJe5afGb 2 2010-12-14T03:40:24-08:00 If the network/connections query or table contains references to nodes that do not appear in the query that supplies the labels and other data for the nodes, the Matrix Compiler crashes. Though the input data is wrong, it should not crash, but instead report an error. 0 2764343 56 false 95307 dMSCt0w_4r3RfieJe5afGb 56 2 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 4 Test 0

Crash in Matrix Compiler if nodes table does not contain entry for each node mentioned in the network query

2011-02-15T02:40:54-08:00 2.0 2.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Bug Bug dMSCt0w_4r3RfieJe5afGb 8 2011-02-08T02:49:04-08:00 Calculator component to write multiple relations in one go to a text file. 0 3092031 64 false 95307 dMSCt0w_4r3RfieJe5afGb 64 2 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 4 Test 0

Calculator component: Write out multiple relations in one go (text file)

2011-09-21T21:02:54-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 2 2010-06-22T00:31:13-07:00 I would like to determine the *shape* of a node based on a variable using the matrix compiler (e.g. all Dutch nodes as a box) 0 1618107 49 false 95307 dNGZWeG0yr3OBZeJe5afGb,dMSCt0w_4r3RfieJe5afGb 49 3 dNGZWeG0yr3OBZeJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Setting node shape based on variable

2011-09-21T10:52:06-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dNGZWeG0yr3OBZeJe5afGbEdwin_HorlingsEdwin_HorlingsEdwin_Horlings Wish Wish dMSCt0w_4r3RfieJe5afGb 8 2011-02-08T02:46:59-08:00 Create a component that can write multiple relations in one go to a database. 0 3092015 63 false 95307 dMSCt0w_4r3RfieJe5afGb 63 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Calculator component: Write out multiple relations in one go (database)

2011-09-21T21:02:54-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 7 2010-08-09T06:04:21-07:00 A desired component of the network tools (specifically the network component detection tool) would be the ability to return a value that corresponds to within 2 decimal places of the minimum threshold before a component fractures i.e. the threshold that retains the same number of nodes in the component as the base component but with a minimum number of edges. 0 1871215 52 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 52 2 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 0 New 0

Component fracture threshold

2010-08-24T09:52:25-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Wish Wish dMSCt0w_4r3RfieJe5afGb 4 2010-08-19T07:06:54-07:00 Record grouper hangs (when grouping keywords) consistently at 149 matches found and hangs permanently at 166 matching records. Attached is relevant .mdb file with keywords and coupling tables. 0 1973875 53 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 53 2 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 0 New 0

Record grouper hanging

2011-02-04T09:41:15-08:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Bug Bug dMSCt0w_4r3RfieJe5afGb 8 2011-02-04T09:22:54-08:00 The Relation Calculator needs a component that can write out more than one relation for the same pair of objects in one go. Actually, it needs two: one for text format, and one for writing directly to the database. 0 3074805 58 false 95308 dMSCt0w_4r3RfieJe5afGb 58 2 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Calculator component: Write out multiple relations in one go

2011-09-21T21:07:46-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 4 2011-03-17T05:42:18-07:00 As from the table below, the recordgrouper does not seem to distinguish the addresses too well if they are _too_ similar? Maybe commas and spaces between words are confusing it? AddressID; person_address; AddressID cleaned 6; 17-33 Azamino 1-chome, Aoba-ku,Yokohama-shi, Kanagawa 225-0011; 6 7; 17-33, Azamino 1-chome Aoba-ku Yokohama-shi,Kanagawa 225-0011; 7 8; 17-33, Azamino 1-chome Aoba-ku,Yokohama-shi Kanagawa 225-0011; 8 9; 17-33, Azamino 1-chome Aoba-ku,Yokohama-shi, Kanagawa 2250011; 9 11; 17-33, Azamino 1-chome, Aoba-ku,Yokohama-shi, Kanagawa 225-0011; 11 10; 17-33, Azamino 1-chome, Aoba-ku,Yokohama-shi, Kanagawa 2250011; 11 12; 17-33, Azamino 1-chome, Aoba-ku,Yokohama-shi, Kanagawa,225-0011; 12 0 3394128 66 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 66 2 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 0 New 0

RecordGrouper does not take into account commas or spaces between words

2011-03-17T05:42:18-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Bug Bug dMSCt0w_4r3RfieJe5afGb 4 2009-06-19T02:17:08-07:00 high matching to obviously not similar records. no suggestions given for close matches. incorrect indicator of "records in list". 0 410377 2 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 2 3 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 0 New 0

record grouper bug with matching/scoring

2010-08-24T03:45:47-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Bug Bug 4 2009-06-19T02:41:19-07:00 Currently, you can only run through the record grouper tool in one session. Because processing can take a very long time, and the manual step after processing can be labour intensive, it would be beneficial to be able to store and resume while being in the process of approving the suggested matches. This would also make it possible to divide up the work of checking the groupings, both over time and over people. 0 410391 4 false 95308 dMSCt0w_4r3RfieJe5afGb 4 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Add save option to recordgrouper

2010-08-24T03:45:48-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish 4 2009-06-19T02:45:35-07:00 Matching addresses is a time consuming process. Everything is matched with everything, and that makes for a lot of work. It might help to filter the items to match by first splitting the address into seperate words, and then calculating a Jaccard index for each address combination. Only those that have a sufficiently high Jaccard score would need to be processed further. Perhaps a speed increase would be possible this way. Currently, processing 90k addressing takes about 7 hours on a quad core machine. 0 410394 5 false 95308 dMSCt0w_4r3RfieJe5afGb 5 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Pre-process using Jaccard index for address matching

2010-08-24T03:45:48-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Idea Idea 2009-06-26T02:38:30-07:00 For research logs to be complete, they should include how exactly the results were reached. Such logs are important to enable the researcher to track back, find mistakes, repeat steps, etc. It would be helpful if the tools would support such work by outputting user-readable logs. As an extension to this, it would be nice if: * The logs would also be machine-readable, so tools can re-load settings from the logs * The logs would be automatically stored with a project, if the files/folders related to that project are known. Perhaps we should develop a project tracking tool? Or search for a good, existing one? 0 418399 7 false 95308 dMSCt0w_4r3RfieJe5afGb 7 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Keep logs of the files and settings used for every tool

2010-08-24T03:48:56-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Idea Idea dMSCt0w_4r3RfieJe5afGb 2 2009-06-29T03:02:56-07:00 Create a way to output attributes to the Pajek output. This way, it should be possible to manipulate the appearance of nodes and lines based on data in the input database. Depends on ticket #8. 0 420309 9 false 95308 dMSCt0w_4r3RfieJe5afGb 9 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Make it possible to use Pajek attributes

2011-09-21T10:52:09-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 1 2009-06-29T08:07:10-07:00 It would be useful to add an option to the word splitter to report the frequencies of the words that occur in the data set. By making it possible to add words from that frequency report to a stop word list, and then re-run the creation of the word lists, it would make it possible to iteratively create a good set of words. 0 420884 11 false 95308 dMSCt0w_4r3RfieJe5afGb 11 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Add word frequency report and wordlist modification

2010-08-24T03:49:56-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 4 2009-08-07T04:44:57-07:00 When selecting a word in the right-hand screen that is similar to the list of words in the left-hand screen, the word under which all similar words will be group changes to the word I have just clicked. But it does the same for words that are unselected! For example, if the word on the left-hand side is "integrate" and on the right-hand side I have the options "integrates", "integrated", "integration", and "integral" and I unselect "integral", the recordgrouper will want to group all the selected words under "integral". Why not simply group them under the word on the left-hand side of the screen by default, unless otherwise indicated? 0 466023 13 false 95308 dNGZWeG0yr3OBZeJe5afGb,dMSCt0w_4r3RfieJe5afGb 13 3 dNGZWeG0yr3OBZeJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Record grouper sometimes groups words under the wrong word

2010-08-24T04:09:11-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dNGZWeG0yr3OBZeJe5afGbEdwin_HorlingsEdwin_HorlingsEdwin_Horlings Bug Bug dMSCt0w_4r3RfieJe5afGb 0 2009-08-19T08:13:17-07:00 Currently, the ISI Data importer only supports the plain text data file format as it’s input. It would be useful to extend the list of possible input formats, and specifically support the XML format. 0 479359 15 false 95308 dMSCt0w_4r3RfieJe5afGb 15 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Add ISI/XML input format

2011-05-26T02:18:30-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish 2009-11-11T05:09:51-08:00 Sometimes, it is useful to re-use the coordinates that Pajek calculates for network layout. For this, it would be nice if these coordinates could be read back into the database. This would be easy if the labels would just contain the original ID values for the vertices. The data could then be used for tricks like overlaying networks for time slicing. 0 621355 24 false 95308 dMSCt0w_4r3RfieJe5afGb 24 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Create small tool to import .net file into database

2010-08-24T05:08:53-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Idea Idea 2 2009-11-11T05:11:50-08:00 The label size would be a useful property to be able to change. 0 621367 26 false 95308 dMSCt0w_4r3RfieJe5afGb 26 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 4 Test 0

Vertex property: label size

2011-09-21T09:11:06-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish 2 2009-11-11T05:19:10-08:00 It would be cool to be able to output time slices to Pajek. That is possible using the notation documented in the Pajek manual. There are two options there: time events and time intervals; the latter probably more suited here. The input would be the option to select a field that contains the start moment (encoded in a number) and optionally an end moment. If there is no end moment, it would be "until the end". 0 621407 27 false 95308 dMSCt0w_4r3RfieJe5afGb 27 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Vertex & edge/arc property: time slicing

2011-09-21T09:11:06-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish 2 2009-11-11T05:19:52-08:00 Option to colour edges and arcs using some property, like you can with vertices. 0 621415 28 false 95308 dMSCt0w_4r3RfieJe5afGb 28 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Edge/Arc property: Colour

2011-09-21T09:11:06-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish 2 2009-11-11T05:20:27-08:00 Make it possible to label edges and arcs. 0 621421 29 false 95308 dMSCt0w_4r3RfieJe5afGb 29 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Edge/Arc property: Label

2011-09-21T09:11:06-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish 2 2009-11-11T05:21:32-08:00 Make it possible to use one of the five available shape types, using some kind of mapping based on a database field. 0 621423 30 false 95308 dMSCt0w_4r3RfieJe5afGb 30 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Vertex property: shape

2011-09-21T15:04:03-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish 2 2009-11-11T06:04:59-08:00 It would perhaps be useful to output the contents of a field as a property string, so you can create it from database queries or with other means. 0 621577 31 false 95308 dMSCt0w_4r3RfieJe5afGb 31 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Vertex & edge/arc property: free property output

2011-09-21T09:11:06-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 7 2009-11-11T07:17:25-08:00 I would love to see a random generator for a temporal network, i.e. generate a network over a certain time frame, with a set final number of nodes with options to vary the 'randomness' of nodes per period, edge count probability and degree count probability. 0 621819 32 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 32 3 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 0 New 0

Random dynamic network generator

2010-08-24T05:09:01-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Wish Wish dMSCt0w_4r3RfieJe5afGb 7 2009-11-23T03:00:10-08:00 Thresholds are now often set to values that are "known to work well" or determined by experimentation to see what still yields a workable result set. It would be useful to have a tool to visualize the structure of the network (in terms of connectedness, number of partitions, percentage of vertices still connected at all, etc.) at different thresholds. This way, a more educated choice can be made on where to set a threshold. 0 661753 33 false 95308 dMSCt0w_4r3RfieJe5afGb 33 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Create (sub) tool to vizualize and analyze the network composition at different thresholdss

2010-08-24T05:17:16-07:00 120.0 120.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Idea Idea dMSCt0w_4r3RfieJe5afGb 4 2009-12-10T02:16:10-08:00 Every time the RecordGrouper is used (by me), it reaches almost 30% and then just disappears from the desktop. No error message is shown. 0 740027 35 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 35 3 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

RecordGrouper crashes with no error warning

2011-09-21T11:20:31-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Bug Bug 2 2010-01-15T07:27:55-08:00 It would be useful to try to extract sensible defaults for the labels. We could use the field names of the correlation query for this. If we can abstract the table name, we can select a default field for that table as the label field. This could include: Authors: full name Articles: title Journals: name 0 841017 38 false 95308 dMSCt0w_4r3RfieJe5afGb 38 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Create sensible default values for the labels query and -fields

2010-08-24T05:54:42-07:00 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 0 2010-02-26T08:44:57-08:00 Make it possible to use the ISI parser to import Scopus files. 0 1022411 41 false 95308 dMSCt0w_4r3RfieJe5afGb 41 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Add Scopus inport

2011-05-26T02:18:16-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 2010-04-23T04:03:59-07:00 As reported by Thomas: The ISI parser has a problem with records with multi-part surnames that only contain the abbreviated author field (AU). The problem is that in the pre-processing stage of the parsing, the comma's and dots are removed (isiparser.cpp line 140), but these should be used again in the post-processing stage (line 283). 0 1336189 43 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 43 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 4 Test 0

ISI parser creates wrong fake full names for multi-part surnames

2010-08-24T07:41:58-07:00 1.0 1.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Bug Bug dMSCt0w_4r3RfieJe5afGb 7 2010-06-09T03:13:32-07:00 Network component detection tool 1. Using a label that includes any symbols or only numbers i.e. -,+, .,1,10 when naming the new subnetwork results in process hang (stuck on 'modify table' task when processing request). 2. If the default name is used, the process works once. However if you would like to adjust the threshold and create new subnetwork labels, no matter what label you choose, the same task hang occurs. 0 1562873 46 false 95308 dNGZWeG0yr3OBZeJe5afGb,cP7gCMSMCr3OjxeJe5aVNr,dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 46 3 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 4 Test 0

Network component detection tool hanging

2010-08-24T08:36:26-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Bug Bug 2 2010-08-03T07:08:28-07:00 i wish the matrix compiler would output a legend of some kind for the 'fill colour' additional vertex property, perhaps a .txt file in the same place as the .net file..? 0 1841409 51 false 95308 cP7gCMSMCr3OjxeJe5aVNr 51 3 cP7gCMSMCr3OjxeJe5aVNr aYMMUww_8r3RSseJe5aVNr 0 New 0

colour legend for additional vertex properties

2010-08-24T09:45:19-07:00 0.0 0.0 None 0.0 0.0 cP7gCMSMCr3OjxeJe5aVNrjamesdawsonjamesdawsonjamesdawson Wish Wish dMSCt0w_4r3RfieJe5afGb 2010-11-21T23:58:18-08:00 I would like to be able to define a project folder and have the various tools jump there when I need to select a database or output file. 0 2596607 54 false 95308 dNGZWeG0yr3OBZeJe5afGb,dMSCt0w_4r3RfieJe5afGb 54 3 dNGZWeG0yr3OBZeJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Project folder

2011-06-28T08:04:43-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dNGZWeG0yr3OBZeJe5afGbEdwin_HorlingsEdwin_HorlingsEdwin_Horlings Wish Wish dMSCt0w_4r3RfieJe5afGb 2 2010-11-22T00:03:41-08:00 To make a 2-mode network (an asymmetric matrix) you unselect "the rows and columns contain the same labels". The matrix compiler than allows you to define labels for rows and columns separately. But when you get to the columns you can't select a new table but are directed to the table used for rows. When you try to set column labels first, you are sent to the matrix database! 0 2596613 55 false 95308 dNGZWeG0yr3OBZeJe5afGb,dMSCt0w_4r3RfieJe5afGb 55 3 dNGZWeG0yr3OBZeJe5afGb aYMMUww_8r3RSseJe5aVNr 0 New 0

Asymmetric matrix (2-mode network) errors occur in selection of label databases

2010-11-22T00:03:41-08:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dNGZWeG0yr3OBZeJe5afGbEdwin_HorlingsEdwin_HorlingsEdwin_Horlings Bug Bug dMSCt0w_4r3RfieJe5afGb 8 2011-02-04T09:24:26-08:00 Create a component to calculate the edit distance for two strings. 0 3074815 59 false 95308 dMSCt0w_4r3RfieJe5afGb 59 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Calculator component: Edit distance

2011-02-04T09:24:26-08:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 8 2011-02-04T09:30:35-08:00 It would be good in terms of UI if multiple IO nodes in the visual representation of an analyzer can be folded into one node, thereby grouping them. The user should be able to connect a whole group at once, and see only a single connecting line while the groups are folded. 0 3074857 61 false 95308 dMSCt0w_4r3RfieJe5afGb 61 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Group component IO interfaces into a single node that can be folded out

2011-02-04T09:30:35-08:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Wish Wish dMSCt0w_4r3RfieJe5afGb 8 2011-02-04T09:32:14-08:00 It would be useful if starting a drag from an IO node in the designer UI would cause compatible IO nodes on other components to be highlighted, so it becomes easier to choose where to connect them. 0 3074865 62 false 95308 dMSCt0w_4r3RfieJe5afGb 62 3 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Highlight compatible IO nodes when starting a drag

2011-02-04T09:32:14-08:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Idea Idea dMSCt0w_4r3RfieJe5afGb 4 2011-03-17T05:13:55-07:00 The RecordGrouper returns 0 results for obviously similar names, but with slight variations and different IDs. Attached is sample dataset. 0 3393922 65 false 95308 dCxEO0xlar3Q8teJe5aVNr,dMSCt0w_4r3RfieJe5afGb 65 3 dCxEO0xlar3Q8teJe5aVNr aYMMUww_8r3RSseJe5aVNr 0 New 0

RecordGrouper does not function on names table

2011-03-17T05:13:55-07:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dCxEO0xlar3Q8teJe5aVNrThomasGurneyThomasGurneyThomasGurney Bug Bug dMSCt0w_4r3RfieJe5afGb 4 2009-06-29T03:31:12-07:00 The record grouper currently does essentially two things: # It determines a score for a relationship between two objects, like words, names or addresses based on an algorithm # It makes it possible to select these object based on these scores to group them into groups in the database. The Record grouper should be modified to concentrate on the second task, and let the calculation of scores be an independent task. It would be nice if it could be integrated in the UI, but that is not essential. 0 420340 10 false 95308 dMSCt0w_4r3RfieJe5afGb 10 4 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Split record grouper

2011-05-26T02:19:19-07:00 80.0 80.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Other Other dMSCt0w_4r3RfieJe5afGb 8 2011-02-04T09:27:53-08:00 It would be nice to have a calculator component that presents an interface to the user to choose the actual calculator to use: Jaccard, Salton, Tanimoto or Cosine. Idealy, it would have both a selector input and output, and present a user interface only if the input is not connected. This way, you can have the interface be presented only once, and through the selection output connected to the selection inputs of the other components, select the calculator for all of these components in one go. 0 3074829 60 false 95308 dMSCt0w_4r3RfieJe5afGb 60 4 dMSCt0w_4r3RfieJe5afGb aYMMUww_8r3RSseJe5aVNr 1 Accepted 0

Calculator component: Meta coefficient calculator

2011-02-04T09:27:53-08:00 0.0 0.0 None 0.0 0.0 dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ dMSCt0w_4r3RfieJe5afGbAndreSomersAndreSomersAndreSomerswww.rathenau.nl/tools/ Idea Idea